{ "meta" : { "view" : { "id" : "ymmh-divb", "name" : "CDC Wastewater Data for Influenza A", "assetType" : "dataset", "attribution" : "DIDRI/R3SB", "attributionLink" : "https://www.cdc.gov/nwss/index.html", "averageRating" : 0, "category" : "Public Health Surveillance", "createdAt" : 1753888094, "description" : "This dataset provides a complete time history of Influenza A wastewater sample data and calculated metrics from US sampling locations.\n\nCDC’s National Wastewater Surveillance System (NWSS) includes data collected and reported by:\n• All data with a source designation of “state_territory” were generated by state and local health departments are reported to CDC and supported with funding through the Epidemiology and Laboratory Capacity for the Prevention and Control of Emerging Infectious Diseases (ELC) Cooperative Agreement (https://www.cdc.gov/epidemiology-laboratory-capacity/php/our-work/index.html).\n• All data with a source designation of “cdc_verily” were generated by CDC’s national wastewater testing contract (currently with Verily Life Sciences, LLC).\n• All data with a source designation of “wws” were generated by WastewaterSCAN, a partnership between Stanford University, Emory University, and Verily. All results are understood to be based on inputs that are experimental in nature and are not intended to diagnose or treat any disease. The results are provided “as is” and without warranty of any kind. Stanford does not accept liability for any claim arising out of or in connection with the disclosure of these results. WastewaterSCAN indicates that by accessing or copying any part of the database, the user accepts the terms of Stanford’s license (CC BY-NC 4.0). These data are being made available to inform public health decision making. Anyone seeking to use the database for other purposes or for research is required to contact the WastewaterSCAN / SCAN team (email: wwscan_stanford_emory@lists.stanford.edu) and any use of the data should be cited appropriately (https://data.wastewaterscan.org/about/#18).\n\nLearn more at: https://www.cdc.gov/nwss/index.html.\n\nThis dataset is updated weekly on Fridays.", "diciBackend" : false, "displayType" : "table", "downloadCount" : 1807, "hideFromCatalog" : false, "hideFromDataJson" : false, "licenseId" : "USGOV_WORKS", "locked" : false, "newBackend" : true, "numberOfComments" : 0, "oid" : 41776846, "provenance" : "official", "publicationAppendEnabled" : false, "publicationDate" : 1764608825, "publicationGroup" : 19994719, "publicationStage" : "published", "rowsUpdatedAt" : 1772208353, "rowsUpdatedBy" : "nygt-u2xq", "tableId" : 20185523, "totalTimesRated" : 0, "viewCount" : 3936, "viewLastModified" : 1772208104, "viewType" : "tabular", "approvals" : [ { "reviewedAt" : 1755267490, "reviewedAutomatically" : true, "state" : "approved", "submissionId" : 7233195, "submissionObject" : "public_audience_request", "submissionOutcome" : "change_audience", "submittedAt" : 1755267490, "targetAudience" : "public", "workflowId" : 2100, "submissionDetails" : { "permissionType" : "READ" }, "submissionOutcomeApplication" : { "endedAt" : 1755267490, "failureCount" : 0, "startedAt" : 1755267490, "status" : "success" }, "submitter" : { "id" : "mt3r-qr2b", "displayName" : "NWSS" } } ], "clientContext" : { "clientContextVariables" : [ ], "inheritedVariables" : { } }, "columns" : [ { "id" : -1, "name" : "sid", "dataTypeName" : "meta_data", "fieldName" : ":sid", "position" : 0, "renderTypeName" : "meta_data", "format" : { }, "flags" : [ "hidden" ] }, { "id" : -1, "name" : "id", "dataTypeName" : "meta_data", "fieldName" : ":id", "position" : 0, "renderTypeName" : "meta_data", "format" : { }, "flags" : [ "hidden" ] }, { "id" : -1, "name" : "position", "dataTypeName" : "meta_data", "fieldName" : ":position", "position" : 0, "renderTypeName" : "meta_data", "format" : { }, "flags" : [ "hidden" ] }, { "id" : -1, "name" : "created_at", "dataTypeName" : "meta_data", "fieldName" : ":created_at", "position" : 0, "renderTypeName" : "meta_data", "format" : { }, "flags" : [ "hidden" ] }, { "id" : -1, "name" : "created_meta", "dataTypeName" : "meta_data", "fieldName" : ":created_meta", "position" : 0, "renderTypeName" : "meta_data", "format" : { }, "flags" : [ "hidden" ] }, { "id" : -1, "name" : "updated_at", "dataTypeName" : "meta_data", "fieldName" : ":updated_at", "position" : 0, "renderTypeName" : "meta_data", "format" : { }, "flags" : [ "hidden" ] }, { "id" : -1, "name" : "updated_meta", "dataTypeName" : "meta_data", "fieldName" : ":updated_meta", "position" : 0, "renderTypeName" : "meta_data", "format" : { }, "flags" : [ "hidden" ] }, { "id" : -1, "name" : "meta", "dataTypeName" : "meta_data", "fieldName" : ":meta", "position" : 0, "renderTypeName" : "meta_data", "format" : { }, "flags" : [ "hidden" ] }, { "id" : 622069764, "name" : "record_id", "dataTypeName" : "text", "description" : "A unique identifier for each row of data.", "fieldName" : "record_id", "position" : 1, "renderTypeName" : "text", "tableColumnId" : 163728350, "format" : { } }, { "id" : 622069728, "name" : "sewershed_id", "dataTypeName" : "text", "description" : "A unique identifier for wastewater treatment plants. This is an arbitrary integer used to provide a unique, but anonymous identifier for a wastewater treatment plant. This identifier is consistent over time, such that the same plant retains the same ID regardless of the addition or subtraction of other plants from the data set.", "fieldName" : "sewershed_id", "position" : 2, "renderTypeName" : "text", "tableColumnId" : 160887232, "format" : { "decimalSeparator" : ".", "groupSeparator" : "," } }, { "id" : 622069729, "name" : "wwtp_jurisdiction", "dataTypeName" : "text", "description" : "State, DC, US territory, or Freely Associated State jurisdiction name (2-letter abbreviation) in which the wastewater treatment plant is located.", "fieldName" : "wwtp_jurisdiction", "position" : 3, "renderTypeName" : "text", "tableColumnId" : 160887205, "format" : { } }, { "id" : 622069763, "name" : "source", "dataTypeName" : "text", "description" : "The source of the data collected and reported to CDC's Wastewater Surveillance Program, including public health departments (state_territory), CDC's national wastewater testing contract (cdc_verily, or formerly, cdc_biobot) and an academic partner group WastewaterSCAN (wws). For additional information see: https://www.cdc.gov/nwss/about.html", "fieldName" : "source", "position" : 4, "renderTypeName" : "text", "tableColumnId" : 163728349, "format" : { } }, { "id" : 622069730, "name" : "county_fips", "dataTypeName" : "text", "description" : "5-digit numeric FIPS codes of all counties and county equivalents served by this sampling site (i.e., served by this wastewater treatment plant or, if 'sample_location' is \"upstream\", then by this upstream location). Note that most jurisdictions are covered by counties, but some are covered by county equivalents, such as independent cities, parishes, or census areas.", "fieldName" : "county_fips", "position" : 5, "renderTypeName" : "text", "tableColumnId" : 160887227, "format" : { "decimalSeparator" : ".", "groupSeparator" : "," } }, { "id" : 622069731, "name" : "counties_served", "dataTypeName" : "text", "description" : "The county and county-equivalent names corresponding to the FIPS codes in 'county_fips'.", "fieldName" : "counties_served", "position" : 6, "renderTypeName" : "text", "tableColumnId" : 160887233, "format" : { } }, { "id" : 622069732, "name" : "population_served", "dataTypeName" : "number", "description" : "Estimated number of persons served by this sampling site (i.e., served by this wastewater treatment plant or, if 'sample_location' is \"upstream\", then by this upstream location)", "fieldName" : "population_served", "position" : 7, "renderTypeName" : "number", "tableColumnId" : 160887208, "format" : { "decimalSeparator" : ".", "groupSeparator" : "," } }, { "id" : 622069733, "name" : "sample_id", "dataTypeName" : "text", "description" : "An anonymized ID assigned to wastewater samples. Wastewater samples for which multiple pathogen PCR targets are measured should have the same sample ID. ", "fieldName" : "sample_id", "position" : 8, "renderTypeName" : "text", "tableColumnId" : 160887202, "format" : { } }, { "id" : 622069734, "name" : "sample_collect_date", "dataTypeName" : "text", "description" : "Sample collection date", "fieldName" : "sample_collect_date", "position" : 9, "renderTypeName" : "text", "tableColumnId" : 160887214, "format" : { } }, { "id" : 622069735, "name" : "sample_type", "dataTypeName" : "text", "description" : "Type of sample collected, whether grab or composite. If composite, the duration of sampling and type of composite is specified (e.g., \"24-hr flow-weighted composite\"). A grab sample is defined as an individual sample collected without compositing or adding other samples, regardless of whether the sample matrix is liquid wastewater or sludge.", "fieldName" : "sample_type", "position" : 10, "renderTypeName" : "text", "tableColumnId" : 160887210, "format" : { } }, { "id" : 622069736, "name" : "sample_matrix", "dataTypeName" : "text", "description" : "Wastewater matrix from which the sample was collected. Wastewater matrix is a categorical variable specifying the type of wastewater sample used (e.g., raw influent, primary sludge, settled solids).", "fieldName" : "sample_matrix", "position" : 11, "renderTypeName" : "text", "tableColumnId" : 160887218, "format" : { } }, { "id" : 622069737, "name" : "sample_location", "dataTypeName" : "text", "description" : "Sample collection location in the wastewater system, whether at a wastewater treatment plant (or other community level treatment infrastructure such as community-scale septic) or upstream in the wastewater system", "fieldName" : "sample_location", "position" : 12, "renderTypeName" : "text", "tableColumnId" : 160887229, "format" : { } }, { "id" : 622069738, "name" : "flow_rate", "dataTypeName" : "number", "description" : "Wastewater volumetric flow rate at the sample collection location over the 24-hr period during which the sample was collected. If only an instantaneous flow measurement is available, it may be reported in units of million gallons per day. ", "fieldName" : "flow_rate", "position" : 13, "renderTypeName" : "number", "tableColumnId" : 160887216, "format" : { "decimalSeparator" : ".", "groupSeparator" : "," } }, { "id" : 622069739, "name" : "concentration_method", "dataTypeName" : "text", "description" : "Laboratory method used to concentrate (or enrich) the sample prior to analysis of the concentrate. This procedures concentrates pathogen titers from a larger volume of wastewater prior to extraction and molecular detection. ", "fieldName" : "concentration_method", "position" : 14, "renderTypeName" : "text", "tableColumnId" : 160887234, "format" : { } }, { "id" : 622069740, "name" : "pasteurized", "dataTypeName" : "text", "description" : "A yes/no flag indicating whether the sample pasteurized or heat treated. ", "fieldName" : "pasteurized", "position" : 15, "renderTypeName" : "text", "tableColumnId" : 160887211, "format" : { } }, { "id" : 622069741, "name" : "pcr_type", "dataTypeName" : "text", "description" : "The type of PCR (e.g., qPCR, dPCR, ddPCR) used to quantify the PCR target", "fieldName" : "pcr_type", "position" : 16, "renderTypeName" : "text", "tableColumnId" : 160887235, "format" : { } }, { "id" : 622069742, "name" : "extraction_method", "dataTypeName" : "text", "description" : "Laboratory method used to purify the genetic material (RNA or DNA) of the PCR target by extraction from the sample.", "fieldName" : "extraction_method", "position" : 17, "renderTypeName" : "text", "tableColumnId" : 160887213, "format" : { } }, { "id" : 622069743, "name" : "major_lab_method", "dataTypeName" : "text", "description" : "A number used to distinguish major lab methods at the reporting jurisdiction level. Differences in lab methods may limit the comparability of PCR target concentrations. Reporting jurisdictions should use this field to indicate that lab methods are sufficiently different that caution should be used when comparing PCR target concentrations across them. These differences may result from any lab processing or quantification steps, including different PCR gene targets. Note that 'major_lab_method' may be the same for different laboratories if the reporting jurisdiction believes concentrations measured by those laboratories are comparable; conversely, 'major_lab_method' may be different for the same laboratory if changes made to the laboratory protocol rendered concentrations not comparable. Also note that major lab method is only comparable across reporting site and should not be compared across different sites.", "fieldName" : "major_lab_method", "position" : 18, "renderTypeName" : "text", "tableColumnId" : 160887224, "format" : { "decimalSeparator" : ".", "groupSeparator" : "," } }, { "id" : 622069744, "name" : "inhibition_detect", "dataTypeName" : "text", "description" : "A yes/no flag indicating whether molecular inhibition was detected in the assay. A \"yes\" value means that amplification and detection are suppressed due to interfering substances in the sample, while a \"no\" value means inhibition was not detected. Detecting inhibition is essential for assessing assay performance and ensuring reliable quantification of target analytes.", "fieldName" : "inhibition_detect", "position" : 19, "renderTypeName" : "text", "tableColumnId" : 160887225, "format" : { } }, { "id" : 622069745, "name" : "inhibition_adjust", "dataTypeName" : "text", "description" : "A yes/no flag indicating whether inhibitory effects were factored into the PCR target concentration calculation. A “yes” value means that the measured PCR target concentration was adjusted for suppressed signals due to interfering compounds. Incorporating inhibition adjustments prevents underestimation of target levels.", "fieldName" : "inhibition_adjust", "position" : 20, "renderTypeName" : "text", "tableColumnId" : 160887212, "format" : { } }, { "id" : 622069746, "name" : "ntc_amplify", "dataTypeName" : "text", "description" : "A yes/no flag indicating contamination of PCR reagents. No template controls is a negative control to detect contamination of PCR reagents by running reactions with no nucleic acid template added. A \"yes\" value (any values above the positive threshold) indicates a positive NTC result which suggests reagent contamination and the experiment is no longer valid. ", "fieldName" : "ntc_amplify", "position" : 21, "renderTypeName" : "text", "tableColumnId" : 160887220, "format" : { } }, { "id" : 622069747, "name" : "pcr_target", "dataTypeName" : "text", "description" : "The target of the PCR quantification (pathogen or antimicrobial resistance (AMR) groups)", "fieldName" : "pcr_target", "position" : 22, "renderTypeName" : "text", "tableColumnId" : 160887228, "format" : { } }, { "id" : 622069748, "name" : "pcr_gene_target_agg", "dataTypeName" : "text", "description" : "The PCR gene used to quantify PCR target. Multiple gene targets may be tested, in which case they would be aggregated to reflect the various targets.", "fieldName" : "pcr_gene_target_agg", "position" : 23, "renderTypeName" : "text", "tableColumnId" : 160887217, "format" : { } }, { "id" : 622069749, "name" : "pcr_target_avg_conc", "dataTypeName" : "number", "description" : "Concentration of the PCR target back-calculated to unconcentrated sample basis; value is \"0\" if no amplification occurred, using the definition of amplification described in 'ntc_amplify'; otherwise, the estimated concentration was entered; does not adjust for matrix recovery efficiency. Only the technical or biological replicate concentrations for the same pcr_gene_target are averaged. ", "fieldName" : "pcr_target_avg_conc", "position" : 24, "renderTypeName" : "number", "tableColumnId" : 160887230, "format" : { "decimalSeparator" : ".", "groupSeparator" : "," } }, { "id" : 622069750, "name" : "pcr_target_units", "dataTypeName" : "text", "description" : "Units of PCR target sample concentration", "fieldName" : "pcr_target_units", "position" : 25, "renderTypeName" : "text", "tableColumnId" : 160887209, "format" : { } }, { "id" : 622069751, "name" : "lod_sewage", "dataTypeName" : "number", "description" : "PCR target limit of detection (LOD) is the lowest analyte concentration that can be reliably detected by a PCR assay. This value is the LOD concentration that has been back-calculated to the PCR target concentration PRIOR to sample concentration to adjust for any concentrations or dilutions performed on samples.", "fieldName" : "lod_sewage", "position" : 26, "renderTypeName" : "number", "tableColumnId" : 160887226, "format" : { "decimalSeparator" : ".", "groupSeparator" : "," } }, { "id" : 622069752, "name" : "pcr_target_avg_conc_lin", "dataTypeName" : "number", "description" : "Concentration of the PCR target on a per sample amount basis; this is merely 'pcr_target_avg_conc', where all values are on a linear (not log10) concentration basis. The PCR target is defined in the field, 'pcr_target' and its associated target gene in 'pcr_gene_target'.", "fieldName" : "pcr_target_avg_conc_lin", "position" : 27, "renderTypeName" : "number", "tableColumnId" : 160887201, "format" : { "decimalSeparator" : ".", "groupSeparator" : "," } }, { "id" : 622069753, "name" : "pcr_target_flowpop_lin", "dataTypeName" : "number", "description" : "Flow-population-normalized PCR target concentration on linear scale; calculated as concentration*flow/population. The PCR target is defined in the field, 'pcr_target' and its associated target gene in 'pcr_gene_target'.", "fieldName" : "pcr_target_flowpop_lin", "position" : 28, "renderTypeName" : "number", "tableColumnId" : 160887204, "format" : { "decimalSeparator" : ".", "groupSeparator" : "," } }, { "id" : 622069754, "name" : "pcr_target_mic_lin", "dataTypeName" : "number", "description" : "Microbial-normalized PCR target concentration on linear scale; calculated as (concentration of pathogen) / (concentration of microbial endogenous control). The PCR target is defined in the field, 'pcr_target' and its associated target gene in 'pcr_gene_target'.", "fieldName" : "pcr_target_mic_lin", "position" : 29, "renderTypeName" : "number", "tableColumnId" : 160887203, "format" : { "decimalSeparator" : ".", "groupSeparator" : "," } }, { "id" : 622069755, "name" : "hum_frac_target_mic", "dataTypeName" : "text", "description" : "Name of microbial target used to estimate human fecal content", "fieldName" : "hum_frac_target_mic", "position" : 30, "renderTypeName" : "text", "tableColumnId" : 160887223, "format" : { } }, { "id" : 622069756, "name" : "hum_frac_mic_conc", "dataTypeName" : "number", "description" : "Concentration of microbial target specified in 'hum_frac_target_mic'", "fieldName" : "hum_frac_mic_conc", "position" : 31, "renderTypeName" : "number", "tableColumnId" : 160887219, "format" : { "decimalSeparator" : ".", "groupSeparator" : "," } }, { "id" : 622069757, "name" : "hum_frac_mic_unit", "dataTypeName" : "text", "description" : "Concentration units of microbial target specified in 'hum_frac_target_mic'", "fieldName" : "hum_frac_mic_unit", "position" : 32, "renderTypeName" : "text", "tableColumnId" : 160887206, "format" : { } }, { "id" : 622069758, "name" : "rec_eff_percent", "dataTypeName" : "number", "description" : "Recovery efficiency percent calculates the recovery (or loss) of an exogenous organism (\"rec_eff_target_name\") from a wastewater sample after it has been fully processed (e.g., concentration and extraction) and measured by molecular detection methods such as PCR. Recovery efficiency percent is calculated by comparing the total measured gene copies in the fully processed sample (e.g., nucleic acid extract) to the measured or theoretical gene copy value of the initial spike-in concentration that was added to the wastewater sample prior to processing (\"rec_eff_spike_conc\"). “rec_eff_percent” = [((Measured \"rec_eff_target_name\" gene copies)/(\"rec_eff_spike_conc\" gene copies)) x 100].", "fieldName" : "rec_eff_percent", "position" : 33, "renderTypeName" : "number", "tableColumnId" : 160887207, "format" : { "decimalSeparator" : ".", "groupSeparator" : "," } }, { "id" : 622069759, "name" : "rec_eff_target_name", "dataTypeName" : "text", "description" : "Name of the recovery efficiency control target that is spiked in to the sample process to assess recovery efficiency. The measured concentration of this variable is used to calculate \"rec_eff_percent.\"", "fieldName" : "rec_eff_target_name", "position" : 34, "renderTypeName" : "text", "tableColumnId" : 160887222, "format" : { } }, { "id" : 622069760, "name" : "rec_eff_spike_matrix", "dataTypeName" : "text", "description" : "Matrix into which the recovery efficiency control target is spiked to assess recovery efficiency: \"rec_eff_percent.\" ", "fieldName" : "rec_eff_spike_matrix", "position" : 35, "renderTypeName" : "text", "tableColumnId" : 160887221, "format" : { } }, { "id" : 622069761, "name" : "rec_eff_spike_conc", "dataTypeName" : "number", "description" : "Spike concentration, on average, of the recovery control on a per sample volume basis. 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It is not advised that wastewater concentrations be compared across sampling locations.", "Suggested Citation" : "Centers for Disease Control and Prevention, National Wastewater Surveillance System Analytics Data Set, year(s), as compiled from data provided through National Wastewater Surveillance System in the Rapid Response Research and Surveillance Branch (R3SB).", "Geographic Unit of Analysis" : "Sampling location" }, "Common Core" : { "Contact Email" : "NWSS@cdc.gov", "Homepage" : "https://www.cdc.gov/nwss/index.html", "Language" : "English", "Contact Name" : "National Wastewater Surveillance System (NWSS)", "Update Frequency" : "R/P1W", "Program Code" : "009:028", "Geographic Coverage" : "US States and Territories", "Bureau Code" : "009:20", "Public Access Level" : "public" } }, "rowLabel" : "Wastewater sample data for Influenza A from a sewershed site on date of collection", "availableDisplayTypes" : [ "table", "fatrow", "page" ] }, "owner" : { "id" : "mt3r-qr2b", "displayName" 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