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", "fieldName" : "flow_rate", "position" : 13, "renderTypeName" : "number", "tableColumnId" : 160887198, "cachedContents" : { "non_null" : "41923", "largest" : "592.0", "null" : "43827", "top" : [ { "item" : "5.0", "count" : "1398" }, { "item" : "1.5", "count" : "1174" }, { "item" : "7.0", "count" : "1047" }, { "item" : "1.0", "count" : "863" }, { "item" : "6.0", "count" : "591" }, { "item" : "3.0", "count" : "588" }, { "item" : "2.5", "count" : "528" }, { "item" : "2.0", "count" : "502" }, { "item" : "12.0", "count" : "437" }, { "item" : "86.0", "count" : "423" }, { "item" : "0.9", "count" : "419" }, { "item" : "10.0", "count" : "392" }, { "item" : "1.3", "count" : "386" }, { "item" : "0.8", "count" : "354" }, { "item" : "2.6", "count" : "329" }, { "item" : "1.6", "count" : "315" }, { "item" : "8.0", "count" : "313" }, { "item" : "7.5", "count" : "306" }, { "item" : "4.5", "count" : "306" }, { "item" : "3.5", "count" : "306" } ], "smallest" : "0.0", "count" : "85750", "cardinality" : "85750" }, "format" : { "decimalSeparator" : ".", "groupSeparator" : "," } }, { "id" : 622069861, "name" : "concentration_method", "dataTypeName" : "text", "description" : "Laboratory method used to concentrate (or enrich) the sample prior to analysis of the concentrate. This procedures concentrates pathogen titers from a larger volume of wastewater prior to extraction and molecular detection. ", "fieldName" : "concentration_method", "position" : 14, "renderTypeName" : "text", "tableColumnId" : 160887194, "cachedContents" : { "non_null" : "85750", "largest" : "water concentrating buffer (r2042-1)", "null" : "0", "top" : [ { "item" : "none", "count" : "42282" }, { "item" : "ceres nanotrap", "count" : "32791" }, { "item" : "thermo magmax wastewater ultra nucleic acid isolation kit", "count" : "2813" }, { "item" : "membrane filtration with no amendment", "count" : "2786" }, { "item" : "water concentrating buffer (r2042-1)", "count" : "1983" }, { "item" : "promega wastewater large volume tna capture kit", "count" : "1729" }, { "item" : "innovaprep ultrafiltration", "count" : "988" }, { "item" : "membrane filtration with acidification and mgcl2", "count" : "321" }, { "item" : "membrane filtration with addition of mgcl2", "count" : "57" } ], "smallest" : "ceres nanotrap", "count" : "85750", "cardinality" : "85750" }, "format" : { } }, { "id" : 622069862, "name" : "pasteurized", "dataTypeName" : "text", "description" : "A yes/no flag indicating whether the sample pasteurized or heat treated. ", "fieldName" : "pasteurized", "position" : 15, "renderTypeName" : "text", "tableColumnId" : 160887199, "cachedContents" : { "non_null" : "85750", "largest" : "yes", "null" : "0", "top" : [ { "item" : "no", "count" : "84857" }, { "item" : "yes", "count" : "893" } ], "smallest" : "no", "count" : "85750", "cardinality" : "85750" }, "format" : { } }, { "id" : 622069863, "name" : "pcr_type", "dataTypeName" : "text", "description" : "The type of PCR (e.g., qPCR, dPCR, ddPCR) used to quantify the PCR target", "fieldName" : "pcr_type", "position" : 16, "renderTypeName" : "text", "tableColumnId" : 160887178, "cachedContents" : { "non_null" : "85750", "largest" : "qpcr", "null" : "0", "top" : [ { "item" : "ddpcr", "count" : "75756" }, { "item" : "dpcr", "count" : "4306" }, { "item" : "qiagen dpcr", "count" : "3705" }, { "item" : "qpcr", "count" : "1983" } ], "smallest" : "ddpcr", "count" : "85750", "cardinality" : "85750" }, "format" : { } }, { "id" : 622069864, "name" : "extraction_method", "dataTypeName" : "text", "description" : "Laboratory method used to purify the genetic material (RNA or DNA) of the PCR target by extraction from the sample.", "fieldName" : "extraction_method", "position" : 17, "renderTypeName" : "text", "tableColumnId" : 160887173, "cachedContents" : { "non_null" : "85750", "largest" : "thermo magmax wastewater ultra nucleic acid isolation kit", "null" : "0", "top" : [ { "item" : "chemagic viral dna/rna 300 kit", "count" : "42282" }, { "item" : "thermo magmax viral/pathogen nucleic acid isolation kit", "count" : "23677" }, { "item" : "thermo magmax microbiome ultra nucleic acid isolation kit", "count" : "11823" }, { "item" : "thermo magmax wastewater ultra nucleic acid isolation kit", "count" : "2813" }, { "item" : "monarch total rna miniprep kit (new england biolabs) + onestep pcr inhibitor removal kit (zymo)", "count" : "1983" }, { "item" : "promega automated tna kit", "count" : "1528" }, { "item" : "qiagen allprep powerviral dna/rna kit", "count" : "595" }, { "item" : "nuclisens manual magnetic bead extraction kit", "count" : "298" }, { "item" : "qiaamp viral rna kit", "count" : "277" }, { "item" : "applied biosystems magmax wastewater ultra nucleic acid isolation kit", "count" : "216" }, { "item" : "promega wastewater large volume tna capture kit", "count" : "201" }, { "item" : "qiagen rneasy kit", "count" : "52" }, { "item" : "qiagen rneasy powermicrobiome kit", "count" : "5" } ], "smallest" : "applied biosystems magmax wastewater ultra nucleic acid isolation kit", "count" : "85750", "cardinality" : "85750" }, "format" : { } }, { "id" : 622069865, "name" : "major_lab_method", "dataTypeName" : "text", "description" : "A number used to distinguish major lab methods at the reporting jurisdiction level. Differences in lab methods may limit the comparability of PCR target concentrations. Reporting jurisdictions should use this field to indicate that lab methods are sufficiently different that caution should be used when comparing PCR target concentrations across them. These differences may result from any lab processing or quantification steps, including different PCR gene targets. Note that 'major_lab_method' may be the same for different laboratories if the reporting jurisdiction believes concentrations measured by those laboratories are comparable; conversely, 'major_lab_method' may be different for the same laboratory if changes made to the laboratory protocol rendered concentrations not comparable. Also note that major lab method is only comparable across reporting site and should not be compared across different sites.", "fieldName" : "major_lab_method", "position" : 18, "renderTypeName" : "text", "tableColumnId" : 160887179, "cachedContents" : { "non_null" : "85750", "largest" : "7", "null" : "0", "top" : [ { "item" : "1", "count" : "56375" }, { "item" : "2", "count" : "24043" }, { "item" : "4", "count" : "2813" }, { "item" : "5", "count" : "1189" }, { "item" : "3", "count" : "541" }, { "item" : "44", "count" : "311" }, { "item" : "7", "count" : "277" }, { "item" : "1.0", "count" : "201" } ], "smallest" : "1", "count" : "85750", "cardinality" : "85750" }, "format" : { "decimalSeparator" : ".", "groupSeparator" : "," } }, { "id" : 622069866, "name" : "inhibition_detect", "dataTypeName" : "text", "description" : "A yes/no flag indicating whether molecular inhibition was detected in the assay. A \"yes\" value means that amplification and detection are suppressed due to interfering substances in the sample, while a \"no\" value means inhibition was not detected. Detecting inhibition is essential for assessing assay performance and ensuring reliable quantification of target analytes.", "fieldName" : "inhibition_detect", "position" : 19, "renderTypeName" : "text", "tableColumnId" : 160887191, "cachedContents" : { "non_null" : "85750", "largest" : "yes", "null" : "0", "top" : [ { "item" : "not tested", "count" : "56471" }, { "item" : "no", "count" : "29272" }, { "item" : "yes", "count" : "7" } ], "smallest" : "no", "count" : "85750", "cardinality" : "85750" }, "format" : { } }, { "id" : 622069867, "name" : "inhibition_adjust", "dataTypeName" : "text", "description" : "A yes/no flag indicating whether inhibitory effects were factored into the PCR target concentration calculation. A “yes” value means that the measured PCR target concentration was adjusted for suppressed signals due to interfering compounds. Incorporating inhibition adjustments prevents underestimation of target levels.", "fieldName" : "inhibition_adjust", "position" : 20, "renderTypeName" : "text", "tableColumnId" : 160887181, "cachedContents" : { "non_null" : "29426", "largest" : "yes", "null" : "56324", "top" : [ { "item" : "no", "count" : "29422" }, { "item" : "yes", "count" : "4" } ], "smallest" : "no", "count" : "85750", "cardinality" : "85750" }, "format" : { } }, { "id" : 622069868, "name" : "ntc_amplify", "dataTypeName" : "text", "description" : "A yes/no flag indicating contamination of PCR reagents. No template controls is a negative control to detect contamination of PCR reagents by running reactions with no nucleic acid template added. A \"yes\" value (any values above the positive threshold) indicates a positive NTC result which suggests reagent contamination and the experiment is no longer valid. ", "fieldName" : "ntc_amplify", "position" : 21, "renderTypeName" : "text", "tableColumnId" : 160887186, "cachedContents" : { "non_null" : "85750", "largest" : "no", "null" : "0", "top" : [ { "item" : "no", "count" : "85750" } ], "smallest" : "no", "count" : "85750", "cardinality" : "85750" }, "format" : { } }, { "id" : 622069869, "name" : "pcr_target", "dataTypeName" : "text", "description" : "The target of the PCR quantification (pathogen or antimicrobial resistance (AMR) groups)", "fieldName" : "pcr_target", "position" : 22, "renderTypeName" : "text", "tableColumnId" : 160887177, "cachedContents" : { "non_null" : "85750", "largest" : "fluav a h5", "null" : "0", "top" : [ { "item" : "fluav a h5", "count" : "85750" } ], "smallest" : "fluav a h5", "count" : "85750", "cardinality" : "85750" }, "format" : { } }, { "id" : 622069870, "name" : "pcr_gene_target_agg", "dataTypeName" : "text", "description" : "The PCR gene used to quantify PCR target. Multiple gene targets may be tested, in which case they would be aggregated to reflect the various targets.", "fieldName" : "pcr_gene_target_agg", "position" : 23, "renderTypeName" : "text", "tableColumnId" : 160887185, "cachedContents" : { "non_null" : "85750", "largest" : "infa_h5 (verily)", "null" : "0", "top" : [ { "item" : "infa_h5 (verily)", "count" : "67386" }, { "item" : "infa_h5 (cdc)", "count" : "14679" }, { "item" : "infa_h5 (gt-digital)", "count" : "3685" } ], "smallest" : "infa_h5 (cdc)", "count" : "85750", "cardinality" : "85750" }, "format" : { } }, { "id" : 622069871, "name" : "pcr_target_avg_conc", "dataTypeName" : "number", "description" : "Concentration of the PCR target back-calculated to unconcentrated sample basis; value is \"0\" if no amplification occurred, using the definition of amplification described in 'ntc_amplify'; otherwise, the estimated concentration was entered; does not adjust for matrix recovery efficiency. Only the technical or biological replicate concentrations for the same pcr_gene_target are averaged. ", "fieldName" : "pcr_target_avg_conc", "position" : 24, "renderTypeName" : "number", "tableColumnId" : 160887175, "cachedContents" : { "non_null" : "85750", "largest" : "3340909.09091", "null" : "0", "top" : [ { "item" : "0.0", "count" : "82592" }, { "item" : "600.0", "count" : "53" }, { "item" : "549.0", "count" : "28" }, { "item" : "1100.0", "count" : "17" }, { "item" : "548.0", "count" : "14" }, { "item" : "547.0", "count" : "13" }, { "item" : "2773.3201", "count" : "9" }, { "item" : "546.0", "count" : "9" }, { "item" : "5597.57601", "count" : "8" }, { "item" : "629.0", "count" : "8" }, { "item" : "606.0", "count" : "8" }, { "item" : "617.0", "count" : "7" }, { "item" : "1377.20947", "count" : "6" }, { "item" : "4159.1061", "count" : "5" }, { "item" : "2798.98132", "count" : "5" }, { "item" : "4125.0", "count" : "5" }, { "item" : "3250.0", "count" : "4" }, { "item" : "292.0", "count" : "4" }, { "item" : "2992.26464", "count" : "4" }, { "item" : "2971.66603", "count" : "4" } ], "smallest" : "0.0", "count" : "85750", "cardinality" : "85750" }, "format" : { "decimalSeparator" : ".", "groupSeparator" : "," } }, { "id" : 622069872, "name" : "pcr_target_units", "dataTypeName" : "text", "description" : "Units of PCR target sample concentration", "fieldName" : "pcr_target_units", "position" : 25, "renderTypeName" : "text", "tableColumnId" : 160887183, "cachedContents" : { "non_null" : "85750", "largest" : "copies/l wastewater", "null" : "0", "top" : [ { "item" : "copies/l wastewater", "count" : "43468" }, { "item" : "copies/g dry sludge", "count" : "42282" } ], "smallest" : "copies/g dry sludge", "count" : "85750", "cardinality" : "85750" }, "format" : { } }, { "id" : 622069873, "name" : "lod_sewage", "dataTypeName" : "number", "description" : "PCR target limit of detection (LOD) is the lowest analyte concentration that can be reliably detected by a PCR assay. This value is the LOD concentration that has been back-calculated to the PCR target concentration PRIOR to sample concentration to adjust for any concentrations or dilutions performed on samples.", "fieldName" : "lod_sewage", "position" : 26, "renderTypeName" : "number", "tableColumnId" : 160887182, "cachedContents" : { "non_null" : "85750", "largest" : "146200.0", "null" : "0", "top" : [ { "item" : "1100.0", "count" : "42282" }, { "item" : "1500.0", "count" : "22689" }, { "item" : "5000.0", "count" : "5101" }, { "item" : "1200.0", "count" : "2813" }, { "item" : "7800.0", "count" : "2242" }, { "item" : "4280.0", "count" : "1528" }, { "item" : "891.25094", "count" : "939" }, { "item" : "5500.0", "count" : "755" }, { "item" : "14620.0", "count" : "648" }, { "item" : "7000.0", "count" : "541" }, { "item" : "30.13314", "count" : "474" }, { "item" : "146200.0", "count" : "339" }, { "item" : "2642.40876", "count" : "339" }, { "item" : "13000.0", "count" : "311" }, { "item" : "8854.0", "count" : "261" }, { "item" : "224.14969", "count" : "259" }, { "item" : "587.59", "count" : "256" }, { "item" : "96.9", "count" : "237" }, { "item" : "1069.05488", "count" : "235" }, { "item" : "51.29178", "count" : "222" } ], "smallest" : "30.13314", "count" : "85750", "cardinality" : "85750" }, "format" : { "decimalSeparator" : ".", "groupSeparator" : "," } }, { "id" : 622069874, "name" : "pcr_target_avg_conc_lin", "dataTypeName" : "number", "description" : "Concentration of the PCR target on a per sample amount basis; this is merely 'pcr_target_avg_conc', where all values are on a linear (not log10) concentration basis. The PCR target is defined in the field, 'pcr_target' and its associated target gene in 'pcr_gene_target'.", "fieldName" : "pcr_target_avg_conc_lin", "position" : 27, "renderTypeName" : "number", "tableColumnId" : 160887196, "cachedContents" : { "non_null" : "85750", "largest" : "3340909.09091", "null" : "0", "top" : [ { "item" : "550.0", "count" : "41206" }, { "item" : "750.0", "count" : "22235" }, { "item" : "2500.0", "count" : "4681" }, { "item" : "600.0", "count" : "2782" }, { "item" : "3900.0", "count" : "2099" }, { "item" : "2140.0", "count" : "1528" }, { "item" : "445.62547", "count" : "816" }, { "item" : "2750.0", "count" : "755" }, { "item" : "7310.0", "count" : "632" }, { "item" : "3500.0", "count" : "541" }, { "item" : "15.06657", "count" : "474" }, { "item" : "73100.0", "count" : "339" }, { "item" : "1321.20438", "count" : "312" }, { "item" : "6500.0", "count" : "311" }, { "item" : "4427.0", "count" : "261" }, { "item" : "112.07485", "count" : "259" }, { "item" : "293.795", "count" : "256" }, { "item" : "48.45", "count" : "237" }, { "item" : "25.64589", "count" : "222" }, { "item" : "1000.0", "count" : "216" } ], "smallest" : "15.06657", "count" : "85750", "cardinality" : "85750" }, "format" : { "decimalSeparator" : ".", "groupSeparator" : "," } }, { "id" : 622069875, "name" : "pcr_target_flowpop_lin", "dataTypeName" : "number", "description" : "Flow-population-normalized PCR target concentration on linear scale; calculated as concentration*flow/population. The PCR target is defined in the field, 'pcr_target' and its associated target gene in 'pcr_gene_target'.", "fieldName" : "pcr_target_flowpop_lin", "position" : 28, "renderTypeName" : "number", "tableColumnId" : 160887172, "cachedContents" : { "non_null" : "41900", "largest" : "1027105200", "null" : "43850", "top" : [ { "item" : "189270.0", "count" : "372" }, { "item" : "212928.75", "count" : "363" }, { "item" : "236587.5", "count" : "352" }, { "item" : "354881.25", "count" : "315" }, { "item" : "218388.46154", "count" : "300" }, { "item" : "615127.5", "count" : "294" }, { "item" : "522982.89474", "count" : "287" }, { "item" : "283905.0", "count" : "281" }, { "item" : "397467.0", "count" : "277" }, { "item" : "230689.19668", "count" : "271" }, { "item" : "198733.5", "count" : "267" }, { "item" : "243347.14286", "count" : "259" }, { "item" : "340686.0", "count" : "205" }, { "item" : "1495443.3", "count" : "170" }, { "item" : "851715.0", "count" : "162" }, { "item" : "197499.13043", "count" : "154" }, { "item" : "261230.21715", "count" : "154" }, { "item" : "160468.04348", "count" : "153" }, { "item" : "154296.19565", "count" : "153" }, { "item" : "68137.2", "count" : "153" } ], "smallest" : "153.2963", "count" : "85750", "cardinality" : "85750" }, "format" : { "decimalSeparator" : ".", "groupSeparator" : "," } }, { "id" : 622069876, "name" : "pcr_target_mic_lin", "dataTypeName" : "number", "description" : "Microbial-normalized PCR target concentration on linear scale; calculated as (concentration of pathogen) / (concentration of microbial endogenous control). 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The measured concentration of this variable is used to calculate \"rec_eff_percent.\"", "fieldName" : "rec_eff_target_name", "position" : 34, "renderTypeName" : "text", "tableColumnId" : 160887184, "cachedContents" : { "non_null" : "83508", "largest" : "mhv (prevalence)", "null" : "2242", "top" : [ { "item" : "bcov vaccine", "count" : "77963" }, { "item" : "mhv (prevalence)", "count" : "3029" }, { "item" : "brsv vaccine", "count" : "2516" } ], "smallest" : "bcov vaccine", "count" : "85750", "cardinality" : "85750" }, "format" : { } }, { "id" : 622069882, "name" : "rec_eff_spike_matrix", "dataTypeName" : "text", "description" : "Matrix into which the recovery efficiency control target is spiked to assess recovery efficiency: \"rec_eff_percent.\" ", "fieldName" : "rec_eff_spike_matrix", "position" : 35, "renderTypeName" : "text", "tableColumnId" : 160887195, "cachedContents" : { "non_null" : "83508", "largest" : "sample concentrate", "null" : "2242", "top" : [ { "item" : "dewatered solids", "count" : "42282" }, { "item" : "clarified sample", "count" : "22689" }, { "item" : "raw sample", "count" : "15423" }, { "item" : "sample concentrate", "count" : "2035" }, { "item" : "lysis buffer", "count" : "541" }, { "item" : "raw sample post pasteurization", "count" : "538" } ], "smallest" : "clarified sample", "count" : "85750", "cardinality" : "85750" }, "format" : { } }, { "id" : 622069883, "name" : "rec_eff_spike_conc", "dataTypeName" : "number", "description" : "Spike concentration, on average, of the recovery control on a per sample volume basis. 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It is not advised that wastewater concentrations be compared across sampling locations.", "Suggested Citation" : "Centers for Disease Control and Prevention, National Wastewater Surveillance System Analytics Data Set, year(s), as compiled from data provided through National Wastewater Surveillance System in the Rapid Response Research and Surveillance Branch (R3SB).", "Geographic Unit of Analysis" : "Sampling location" }, "Common Core" : { "Contact Email" : "NWSS@cdc.gov", "Homepage" : "https://www.cdc.gov/nwss/index.html", "Language" : "English", "Contact Name" : "National Wastewater Surveillance System (NWSS)", "Update Frequency" : "R/P1W", "Program Code" : "009:028", "Geographic Coverage" : "US States and Territories", "Bureau Code" : "009:20", "Public Access Level" : "public" } }, "rowLabel" : "Wastewater sample data for Avian Influenza A (H5) from a sewershed site on date of collection", "availableDisplayTypes" : [ "table", "fatrow", "page" ] }, "owner" : { "id" : "mt3r-qr2b", 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